Package: HodgesTools 1.0.0
HodgesTools: Common Use Tools for Genomic Analysis
Built by Hodges lab members for current and future Hodges lab members. Other individuals are welcome to use as well. Provides useful functions that the lab uses everyday to analyze various genomic datasets. Critically, only general use functions are provided; functions specific to a given technique are reserved for a separate package. As the lab grows, we expect to continue adding functions to the package to build on previous lab members code.
Authors:
HodgesTools_1.0.0.tar.gz
HodgesTools_1.0.0.zip(r-4.5)HodgesTools_1.0.0.zip(r-4.4)HodgesTools_1.0.0.zip(r-4.3)
HodgesTools_1.0.0.tgz(r-4.4-any)HodgesTools_1.0.0.tgz(r-4.3-any)
HodgesTools_1.0.0.tar.gz(r-4.5-noble)HodgesTools_1.0.0.tar.gz(r-4.4-noble)
HodgesTools_1.0.0.tgz(r-4.4-emscripten)HodgesTools_1.0.0.tgz(r-4.3-emscripten)
HodgesTools.pdf |HodgesTools.html✨
HodgesTools/json (API)
NEWS
| # Install 'HodgesTools' in R: |
| install.packages('HodgesTools', repos = c('https://tyler-hansen.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:fdcba90fbf. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | OK | Oct 31 2024 |
| R-4.5-linux | OK | Oct 31 2024 |
| R-4.4-win | OK | Oct 31 2024 |
| R-4.4-mac | OK | Oct 31 2024 |
| R-4.3-win | OK | Oct 31 2024 |
| R-4.3-mac | OK | Oct 31 2024 |
Exports:append_section_to_inicpg_analysiscreateManhattandQQplot_HOMERTFsread_bed
Dependencies:adabitbit64blobcachemcalibrateclassclicliprcodetoolscolorspacecpp11crayondata.tableDBIdiagramdigestdplyre1071evdfansifarverfastmapfffuturefuture.applygenericsggplot2globalsgluegtablehmsiniipredisobandKernSmoothlabelinglatticelavalifecyclelistenvmagrittrMASSMatrixmemoisemgcvmunsellnlmennetnumDerivparallellypillarpkgconfigplogrprettyunitsprodlimprogressprogressrproxyqqmanR6RColorBrewerRcppreadrRecordLinkagerlangrpartRSQLitescalesshapeSQUAREMsurvivaltibbletidyselecttzdbutf8vctrsviridisLitevroomwithrxtable
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Append section to ini file | append_section_to_ini |
| CpG Analysis | cpg_analysis |
| Creating a Manhattan Plot and QQ plot | createManhattandQQ |
| helper_collapseTableByLevenSim | helper_collapseTableByLevenSim |
| helper_getMaxLevenSimCol | helper_getMaxLevenSimCol |
| makeBigTableFromListofTables | helper_makeBigTableFromListOfStandardTables |
| Plot HOMER TF enrichment results | plot_HOMERTFs |
| Read bed file | read_bed |
